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Research Article

Archaeological Wood Species Identification through DNA Barcoding

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  • 발행기관
    한국문화유산보존과학회(구 한국문화재보존과학회) 바로가기
  • 간행물
    보존과학회지 KCI 등재 바로가기
  • 통권
    제40권 제5호 (2024.12)바로가기
  • 페이지
    pp.757-767
  • 저자
    Donghyeok Jo, Seung Hee Baek, Chungoo Park, Pyung Won Kang, Sook Chung Shin, Lee Hyun-Gwan
  • 언어
    영어(ENG)
  • URL
    https://www.earticle.net/Article/A461013

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원문정보

초록

영어
Identifying wood species from archaeological artifacts provides crucial information for understanding ancient technological capabilities, resource utilization patterns, paleovegetation, environmental changes, and societal interactions. While traditional microscopical anatomy analysis and common genetic markers (rbcL, rpoB, matK, atp, and 18S) for general plants exhibit limitations in archaeological samples due to DNA degradation and contamination, this study employed the chloroplast trnL gene with shorter sequences for wood identification. Metabarcoding analysis was performed on ancient DNA extracted from wooden components of bronze artifacts (乙-shaped bronze implement, Tubular bronze implement, and Twin-bird Shaped Pommel) excavated from the early Iron Age Namyangju site, targeting the trnL (UAA) intron P6 loop. Using our classifier with reference database constructed from NCBI GenBank and expanded plant database, the analysis identified eight plant families (Asteraceae, Brassicaceae, Convolvulaceae, Marantaceae, Rosaceae, Fabaceae, Poaceae, and Amaryllidaceae). Notably, Rosaceae showed significant presence across all samples (乙-shaped bronze implement: 33.05%, Tubular bronze implement 1: 3.17%, Tubular bronze implement 2: 29.09%, Twin-bird Shaped Pommel: 45.2%), suggesting the use of native woody Rosaceae species. This genetic approach successfully refined the identification of previously unspecified “broadleaf tree/hardwood” specimens to the family level, demonstrating its effectiveness as a complementary method in archaeological wood identification. The results not only provide insights into ancient wood resource utilization patterns but establish a methodological framework for future archaeobotanical studies using ancient DNA analysis.

목차

ABSTRACT
1. INTRODUCTION
2. MATERIALS AND METHODS
2.1. W ood s amples and a ncient D NA ( aDNA) purification for next-generation sequencing
2.2. Library preparation, quality control, and DNA Sequencing
2.3. Bioinformatic analysis of metabarcoding data
3. RESULTS
3.1. Initial analysis and sample characterization
3.2. DNA analysis of archaeological wood samples
3.3. Overview of metabarcoding analysis pipeline
3.4. Performance evaluation of taxonomic classification
3.5. Taxonomic composition and native woody plant identification
4. DISCUSSION
5. CONCLUSION
ACKNOWLEDGMENTS
REFERENCES

키워드

Archaeological wood identification Ancient DNA Metabarcoding trnL gene Bronze artifacts

저자

  • Donghyeok Jo [ School of Biological Sciences and Technology, College of Natural Sciences, Chonnam National University, Gwangju 61186, Korea ]
  • Seung Hee Baek [ Hangang Institute of Cultural Heritage, Bucheon 14502, Korea ]
  • Chungoo Park [ School of Biological Sciences and Technology, College of Natural Sciences, Chonnam National University, Gwangju 61186, Korea ]
  • Pyung Won Kang [ Hangang Institute of Cultural Heritage, Bucheon 14502, Korea ]
  • Sook Chung Shin [ Hangang Institute of Cultural Heritage, Bucheon 14502, Korea ]
  • Lee Hyun-Gwan [ PennBIT Co. Ltd., Gwangju 61062, Korea ] Corresponding Author

참고문헌

자료제공 : 네이버학술정보

간행물 정보

발행기관

  • 발행기관명
    한국문화유산보존과학회(구 한국문화재보존과학회) [The Korea Society of Conservation Science for Cultural Heritage]
  • 설립연도
    2003
  • 분야
    자연과학>자연과학일반
  • 소개
    본 법인은 문화재 과학적 보존에 관한 제반 학술적 연구 발전 보급을 위하여 문화재 보존기술 개발과 수리 및 복원에 관한 방법을 연구함으로서 문화재의 보존 및 계승에 기여함을 그 목적으로 한다.

간행물

  • 간행물명
    보존과학회지 [Journal of Conservation Science]
  • 간기
    연5회
  • pISSN
    1225-5459
  • eISSN
    2287-9781
  • 수록기간
    2003~2026
  • 등재여부
    KCI 등재
  • 십진분류
    KDC 602 DDC 700

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