Quantitative structure-activity relationships (QSAR) have been applied for two decades in the development of relationships between physicochemical properties of chemical substances and their biological activities to obtain a reliable statistical model for prediction of the activities of new chemical entities. The fundamental principle underlying the QSAR is that the structural difference is responsible for the variations in biological activities of the compounds. In this work, we developed 3D-QSAR model for a series of 5-Lipoxygenase inhibitors, utilizing comparative molecular field analysis (CoMFA) and Topomer CoMFA methodologies. Our developed models addressed superiority of Topomer CoMFA over CoMFA. The CoMFA model was obtained with q2=0.593, r2=0.939, Q2=0.334 with 6 optimum number of components (ONC). Higher statistical results were obtained with the Topomer CoMFA model (q2=0.819, r2=0.947, ONC=5). Further robustness of developed models was checked with the ANOVA test and it shows F=113 for CoMFA and F=162.4 for Topomer CoMFA model. Contour map analysis indicated that the more requirement of electrostatic parameter for improved potency.
목차
Abstract 1. Introduction 2. Experimental Section 2.1. Data Set 2.2. Molecular Alignment 2.3. Molecular Alignment 2.4. CoMFA 2.5. Topomer CoMFA 2.6. Topomer CoMFA 3. Result 3.1. CoMFA Model Analysis 3.2. Topomer CoMFA Model Analysis 3.3. Contour Map Analysis 4. Discussion References
키워드
CoMFATopomer CoMFA5-Lipoxygenase3D-QSAR
저자
Changdev G. Gadhe [ Department of Pharmacoinformatics, National Institute of Pharmaceutical Education and Research ]
orresponding author
조선대학교 기초과학연구원 [The Natural Science Research Institute of Chosun]
설립연도
2008
분야
자연과학>자연과학일반
소개
본 연구원은 기초과학을 진흥하기 위한 연구·교육 및 그 보급을 목적으로 한다. 이 목적을 달성하기 위하여 다음 각 호의 사업을 수행한다.
1. 기초과학 제 분야에 관한 조사와 연구
2. 기초과학에 관한 학술행사(학술대회, 학술세미나, 심포지엄, 초청강연회 등) 개최
3. 학문후속세대 및 일반인을 위한 기초과학 교육
4. 기관지『조선자연과학논문지』 발간
5. 『자연과학연구총서』, 『자연과학번역총서』 등 단행본 발간
6. 기타 본 연구원의 목적과 관련된 사업
간행물
간행물명
통합자연과학논문집(구 조선자연과학논문집) [Journal of Integrative Natural Science]